It's just an alternative to renaming one of your boot version files to
boot.ini, as I mention below.
This is a bit confusing. You are now saying the C: drive no longer
exists (ie it is not shown) and J: drive has replaced part of it
instead? What is the drive/s box top bar colour, ie is it indigo? If you
do not have any drive marked as 'System' under status then I'm surprised
you can boot up at all.
My 1st physical disk has 4 sections visible in disk management.
C: and J: (both coloured dark blue), the unallocated part which is
coloured black, and D: coloured medium blue. C: is marked System.
All 3 drives on my second physical disk are coloured medium blue.
All drives (except the unallocated part) are accessible, and all have
stuff still there. Nothing seems to be missing.
Drive J: (which appeared during the attempt at ghosting) has the
following on it:
AUTOEXEC
COMMAND
CONFIG.SYS
E.EX
E (APPLICATION)
E (CONFIGURATION SETTINGS)
EHELP
IBMBIO
IBMDOS
MBR
MOUSE (MS-DOS APPLICATION)
MOUSE (CONFIGURATION SETTINGS)
There's also a folder called GHOST. Inside this are:
applications called:
GDISK
GHOST
GHREBOOT
GHSTWALK
GHWRAP
and 3 txt files:
ARGS
GSCRIPT
imgdescp
C, D, E, F, G are NTFS formatted. J is FAT formatted.
All 6 of these drives have the word Healthy on them.
Only C has the word System as well.
What is shown under My Computer? Can you read D: