The problem is that replication of Active Directory is far from the biggest
vulnerability or the most common target. It's more common to just attack
the domain controller either through the network card attached to the
network or by attacking a client workstation or user attached to the domain
controller. If someone wanted to sniff network traffic, they wouldn't be
sniffing the replication traffic, they would be sniffing the client
authentication requests.
Microsoft has hardening guides at
www.microsoft.com/technet/security, and
for Windows 2000 there are also excellent guides at
www.nsa.gov/snac and
http://securityadmin.info/faq.asp#harden These people have been securing
domain controllers in real environments for some time and know what works.
I would avoid trying to reinvent the wheel and first make sure you've gained
all you can from their documents. There are no doubt plenty of other more
important things you have not yet secured.