The list of things that can go wrong is quite lengthy. Some parts of a
scanner may be precision aligned at the factory on an optical test jig;
and when you "just take it apart" ... that alignment is lost (on a Nikon
LS-2000, there are 4 screws that, if removed or even just loosened, will
usually destroy the scanner). You have no idea how many people do not
know how to work the ZIF connectors on "Flex Cables" (those thin, flat
ribbon cables used in a lot of equipment). Also, on some scanners there
are a LOT of "flex cables" and they tear VERY easily, they cannot be
repaired, and in some cases replacements are either difficult to get or
not available at all. I could go on, but the answer to "what can go
wrong" is: LOTS OF THINGS. MOST untrained people who take these things
apart without instructions do damage to them.